Manuals

New version of ordijuice package for R-project

Neupert Markus, Zelený David & Tichý Lubomír

(2017-07-01)

Internship Report. The package can be downloaded from the JUICE program and it is available for R-project version 3.2 and newer.

 

European Expert System - PDF file
(2014-01-08)
Manual for European Expert System classification to 95 vegetation classes. The system expects two check list files available HERE. Files contain encrypted check list of species associated with european classes of vegetation classification. The use of these files is offered only within EuroExpertSystem in JUICE and should be cited as:

 

Ladislav Mucina, Helga Bültmann, Klaus Dierßen, Jean-Paul Theurillat, Thomas Raus, Andraž Čarni, Kateřina Šumberová, Wolfgang Willner, Jürgen Dengler, Rosario Gavilán García, Milan Chytrý, Michal Hájek, Romeo Di Pietro, Dmytro Iakushenko, Jens Pallas, Fred J.A. Daniëls, Erwin Bergmeier, Arnoldo Santos Guerra, Nikolai Ermakov, Milan Valachovič, Joop H.J. Schaminée, Tatiana Lysenko, Yakiv P. Didukh, Sandro Pignatti, John S. Rodwell, Jorge Capelo, Heinrich E. Weber, Ayzik Solomeshch, Panayotis Dimopoulos, Carlos Aguiar, Stephan M. Hennekens & Lubomír Tichý (2016): Vegetation of Europe: Hierarchical floristic classification system of vascular plant, lichen, and algal communities. Applied Vegetation Science. Vol. 19, Suppl. 1: 1–264. FULL ARTICLE.

German Turboveg-Juice-Guidance - PDF file
(2015-10-07)
Christian Berg wrote it for his University course “Analysis of vegetation data”. In case you will use it, please cite.

 

Ukrainian version of the JUICE manual - PDF file (український переклад JUICE)
(2013-07-09)
Anna Kuzemko wrote Ukrainian version of the JUICE manual. Thanks :-)

 

How to merge species automatically?
(2013-04-19)
Salza Todorova wrote a simple PDF with this topic.

 

Synoptic tables in JUICE - How to work with them!
(2012-06-06)
The talk - EVS Vienna 2012

 

PDF manual - program version 7
(2012-01-05)
The new release of program manual is available here. Some functions were modified.

1st part
2nd part

 

Ordination analyses in JUICE
(2011-12-01; in Czech)
Author: Martina Nejezchlebová


PDF manual - program version 6
(2006-06-08)
We have prepared the program manual for JUICE version 6.3 together with Jason Holt, David Zeleny and Milan Chytry. It includes frequently used functions, tips and tricks for effective using the program.

 

French version of the Manual
(2011-05-02)
Author: Florent Beck

German/English version of manual (version 6)
is available on the web page: http://www.geobotanik.org/culmsee

 

Botanical photogallery

Short description of how ti show species photos from selected plot etc. (in Czech)

 

Error handling

Windows VistaLocal settings in XP"Out of Memory"

Video sequentions with demo of some program functions

(AVI files, 2007-03-05)

IMPORT from TURBOVEG 
IMPORT1.AVI (3.1 MB) - the import oc Cornell -Condensed file with EXP and STR file supported by a check list of full species names


PROGRAM SETTINGS 
INICEXTE.AVI (6.8 MB) - initiation of program connection with external applications (PC_ORD, TWINSPAN, D-MAP etc.) 
CHANSIZE.AVI (5.8 MB) - definition of display parameters


MOUSE FUNCTIONS
MOUSE1.AVI (7.0 MB) - see the mouse in the down right corner. 
MOUSE2.AVI (3.6 MB) - the principle of species and relevé aggregation into blocks 
MOUSE3.AVI (3.8 MB) - possibilities of relevé manipulation in headers
MOUSE4.AVI (2.6 MB) - the use of mouse in synoptic table
MOUSE5.AVI (1.5 MB) - separators
ONEREL.AVI (4.9 MB)
- after a double-click one relevé is displayed together with header information


TABLE MODIFICATION
EDITSPEC.AVI (2.5 MB) - editation of species name and layer
EDITHEAD.AVI (7.4 MB) - editation of header fields
NOMENCLA.AVI (5.0 MB) - unification of used nomenclature


CLASSIFICATIONS
TWINSPAN.AVI (8.3 MB) - Twinspan (Hill 1978)
PCORD5.AVI (5.4 MB) - PC-ORD 5 cluster analysis library  
DCA1.AVI (2.8 MB) - detrended correspondence analysis applied on eight clusters of TWINSPAN classification 
TW01.AVI (13.4 MB) - modified TWINSPAN weighted by total inertia.


SYNOPTIC TABLE
CLASDESC.AVI (6.5 MB)- description of selected cluster of synoptic table (diagnostic, constant and dominant species)


OPTIMCLASS: comparison of classifications and selection of optimal number of clusters 
OC01.AVI (11.3 MB) - the use of function with PC-ORD 5 
OC02.AVI (10.4 MB) - visualisation of results in JUICE 
OC03.AVI (13.0 MB) - comparison of classifications made by SYN-TAX, MULVA and  modified TWINSPAN

 

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