Mgr. Petr Šimeček, MSc., Ph.D.

2024

• Knot or not? Identifying unknotted proteins in knotted families with sequence-based Machine Learning model

  SIKORA Maciej KLIMENTOVÁ Eva UCHAL Dawid ŠRÁMKOVÁ Denisa PERLINSKA Agata P NGUYEN Mai Lan KORPACZ Marta MALINOWSKA Roksana NOWAKOWSKI Szymon RUBACH Pawel ŠIMEČEK Petr SULKOWSKA Joanna I

  Article in Periodical

  Protein Science, year: 2024, volume: 33, edition: 7, DOI

2023

• Genomic benchmarks: a collection of datasets for genomic sequence classification

  GREŠOVÁ Katarína MARTINEK Vlastimil ČECHÁK David ŠIMEČEK Petr ALEXIOU Panagiotis

  Article in Periodical

  BMC Genomic Data, year: 2023, volume: 24, edition: 1, DOI

2022

• Genic and chromosomal components of Prdm9-driven hybrid male sterility in mice (Mus musculus)

  VALISKOVA Barbora GREGOROVA Sona LUSTYK Diana ŠIMEČEK Petr JANSA Petr FOREJT Jiri

  Article in Periodical

  Genetics, year: 2022, volume: 222, edition: 1, DOI

• Genomic Benchmarks: A Collection of Datasets for Genomic Sequence Classification

  GREŠOVÁ Katarína ŠIMEČEK Petr MARTINEK Vlastimil ČECHÁK David ALEXIOU Panagiotis

  Conference abstract

  Year: 2022, type: Conference abstract

2020

• High-throughput sleep phenotyping produces robust and heritable traits in Diversity Outbred mice and their founder strains

  KEENAN B.T. GALANTE R.J. LIAN J. ŠIMEČEK Petr GATTI D.M. ZHANG L. LIM D.C. SVENSON K.L. CHURCHILL G.A. PACK A.I.

  Article in Periodical

  SLEEP, year: 2020, volume: 43, edition: 5, DOI

• PENGUINN: Precise Exploration of Nuclear G-Quadruplexes Using Interpretable Neural Networks

  KLIMENTOVÁ Eva POLÁČEK Jakub ŠIMEČEK Petr ALEXIOU Panagiotis

  Article in Periodical

  Frontiers in Genetics, year: 2020, volume: 11, edition: OCT, DOI