Loschmidt Laboratories of Protein Engineering

Articles

• Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone

  FRUHAUF Sebastian PUHRINGER Dominic THAMHESL Michaela FAJTL Patricia KUNZ-VEKIRU Elisavet HOBARTNER-GUSSL Andreas SCHATZMAYR Gerd ADAM Gerhard DAMBORSKÝ Jiří DJINOVIC-CARUGO Kristina PROKOP Zbyněk MOLL Wulf-Dieter

  Article in Periodical

  ACS Catalysis, year: 2024, volume: 14, edition: 5, DOI

• Computer-aided engineering of stabilized fibroblast growth factor 21

  DE LA BOURDONNAYE Gabin GHAZALOVÁ Tereza FOJTÍK Petr KUTALKOVA Katerina BEDNÁŘ David DAMBORSKÝ Jiří ROTREKL Vladimír STEPANKOVA Veronika CHALOUPKOVÁ Radka

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2024, volume: 23, DOI

• Exploring new galaxies: Perspectives on the discovery of novel PET-degrading enzymes

  MIČAN Jan JARADAT Da 'san M. M. LIU Weidong WEBER Gert MAZURENKO Stanislav BORNSCHEUER Uwe T. DAMBORSKÝ Jiří WEI Ren BEDNÁŘ David

  Article in Periodical

  Applied Catalysis B: Environment and Energy, year: 2024, volume: 342, edition: March 2024, DOI

• FireProt 2.0: web-based platform for the fully automated design of thermostable proteins

  MUSIL Miloš JEZIK Andrej HORÁČKOVÁ Jana BORKO Simeon KABOUREK Petr DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 1, DOI

• ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

  ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BEDNÁŘ David BERKA Karel

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: D1, DOI

• InVADo: Interactive Visual Analysis of Molecular Docking Data

  SCHÄFER Marco BRICH Nicolas BYŠKA Jan MARQUES Sérgio Manuel BEDNÁŘ David THIEL Philipp KOZLÍKOVÁ Barbora KRONE Michael

  Article in Periodical

  IEEE Transactions on Visualization and Computer Graphics, year: 2024, volume: 30, edition: 4, DOI

• Optimized procedure for high-throughput transcriptome profiling of small extracellular vesicles isolated from low volume serum samples

  VYCHYTILOVÁ Petra VILMANOVÁ Sára PIFKOVÁ Lucie CATELA IVKOVIĆ Tina MĄDRZYK Marie JUGAS Robin MACHÁČKOVÁ Táňa KOTOUČEK Jan ŠACHLOVÁ Milana BOHOVICOVÁ Lucia STANĚK Teodor HALÁMKOVÁ Jana KISS Igor SLABÝ Ondřej

  Article in Periodical

  Clinical Chemistry and Laboratory Medicine, year: 2024, volume: 62, edition: 1, DOI

• PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning

  ŠTOURAČ Jan BORKO Simeon KHAN Rayyan Tariq POKORNÁ Petra DOBIÁŠ Adam PLANAS IGLESIAS Joan MAZURENKO Stanislav RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 1, DOI